The Complete Genomics Analysis Tools (cgatools) is an open source
project to provide tools for downstream analysis of Complete
Genomics data. The focus is to provide command line utilities, but a
C++ API is available as well. The general areas of functionality
include genome comparison, format conversion, and reference tools.
cgatools runs on Linux/UNIX or Mac OS X. Binaries are available on
those platforms. You can download cgatools from SourceForge here
for the latest release of cgatools, including an installation guide,
is available here
. The most popular CGA Tools commands are
also published in Mac and Linux repositories in the Galaxy Tool Shed
allowing users to harness the graphical interface provided by Galaxy to
develop workflows that incorporate the tools. See the CGA Tools documentation
for more information about installing the tools in Galaxy.