The Complete Genomics Analysis Tools (cgatools) is an open source project to provide tools for downstream analysis of Complete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include genome comparison, format conversion, and reference tools.

Getting Started

cgatools runs on Linux/UNIX or Mac OS X. Binaries are available on those platforms. You can download cgatools from SourceForge here. Documentation for the latest release of cgatools, including an installation guide, is available here. The most popular CGA Tools commands are also published in Mac and Linux repositories in the Galaxy Tool Shed, allowing users to harness the graphical interface provided by Galaxy to develop workflows that incorporate the tools. See the CGA Tools documentation for more information about installing the tools in Galaxy.


Copyright 2013 Complete Genomics, Inc.

Licensed under the Apache License, Version 2.0.