cgatools

The Complete Genomics Analysis Tools (cgatools) is an open source project to provide tools for downstream analysis of Complete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include genome comparison, format conversion, and reference tools.

Getting Started

cgatools runs on Linux/UNIX or Mac OS X. Binaries are available on those platforms. You can download cgatools from SourceForge here. Documentation for the latest release of cgatools, including an installation guide, is available here.

License

Copyright 2011 Complete Genomics, Inc. Licensed under the Apache License, Version 2.0.