cgatools::junctions::JunctionComparatorWithinContig Member List

This is the complete list of members for cgatools::junctions::JunctionComparatorWithinContig, including all inherited members.
collectJunctionGroups(JunctionFile &junctFile, JunctionGroups &result) (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
compare() (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig
compareWithinContig(const JunctionFile &file1, const JunctionFile &file2, const JunctionIndices &indexes1, const JunctionIndices &indexes2, JunctionFile &result1and2, JunctionFile &result1not2, std::ostream &report) const (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig
distanceTolerance_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
file1_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
file2_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
getResult1and2() const (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [inline]
getResult1not2() const (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [inline]
getResult2and1() const (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [inline]
getResult2not1() const (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [inline]
JunctionComparatorWithinContig(const ReferenceGenome &reference, JunctionFile &file1, JunctionFile &file2) (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig
JunctionGroupId typedef (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig
JunctionGroups typedef (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig
junctionGroups1_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
junctionGroups2_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
JunctionIndices typedef (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig
reference_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
result1and2_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
result1not2_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
result2and1_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
result2not1_ (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [protected]
SEPARATOR (defined in cgatools::junctions::JunctionComparatorWithinContig)cgatools::junctions::JunctionComparatorWithinContig [static]
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Defines
Generated by  doxygen 1.6.2