cgatools::reference::CompactDnaSequence Member List

This is the complete list of members for cgatools::reference::CompactDnaSequence, including all inherited members.

appendSequence(std::string &seq, int64_t pos, int64_t length) const	cgatools::reference::CompactDnaSequence
appendUnambiguousSequence(std::string &seq, int64_t pos, int64_t length) const	cgatools::reference::CompactDnaSequence
CompactDnaSequence(const std::string &name, bool circular, const void *packedData, const util::Md5Digest &md5, size_t length, const std::vector< AmbiguousRegion > amb) (defined in cgatools::reference::CompactDnaSequence)	cgatools::reference::CompactDnaSequence
extendLeftBy3Mers(size_t pos, size_t count) const	cgatools::reference::CompactDnaSequence
extendRightBy3Mers(size_t pos, size_t count) const	cgatools::reference::CompactDnaSequence
getAmbiguousRegions() const	cgatools::reference::CompactDnaSequence	[inline]
getBase(int64_t pos) const	cgatools::reference::CompactDnaSequence
getMd5Digest() const	cgatools::reference::CompactDnaSequence	[inline]
getName() const	cgatools::reference::CompactDnaSequence	[inline]
getSequence(int64_t pos, int64_t length) const	cgatools::reference::CompactDnaSequence
getUnambiguousBase(int64_t pos) const	cgatools::reference::CompactDnaSequence
getUnambiguousSequence(int64_t pos, int64_t length) const	cgatools::reference::CompactDnaSequence
isCircular() const	cgatools::reference::CompactDnaSequence	[inline]
length() const	cgatools::reference::CompactDnaSequence	[inline]
validate() const	cgatools::reference::CompactDnaSequence