cgatools::variants::Superlocus Member List

This is the complete list of members for cgatools::variants::Superlocus, including all inherited members.

buildPhasedHypotheses(std::vector< std::vector< PhasedHypothesis > > &hypotheses, size_t maxHypothesisCount, bool useHapLinks) const	cgatools::variants::Superlocus
extendLeftBySuffixMatching(const reference::CrrFile &crr, const reference::Location &loc, const std::string &sequence) (defined in cgatools::variants::Superlocus)	cgatools::variants::Superlocus	[static]
extendRightByPrefixMatching(const reference::CrrFile &crr, const reference::Location &loc, const std::string &sequence) (defined in cgatools::variants::Superlocus)	cgatools::variants::Superlocus	[static]
getId() const	cgatools::variants::Superlocus	[inline]
getLoci(size_t fileOffset) const	cgatools::variants::Superlocus
getRange() const	cgatools::variants::Superlocus	[inline]
Superlocus()	cgatools::variants::Superlocus
SuperlocusIterator (defined in cgatools::variants::Superlocus)	cgatools::variants::Superlocus	[friend]