JunctionStat.hpp File Reference

This file contains code that collects diferent junction file statistics. More...

#include "cgatools/core.hpp"
#include "cgatools/junctions/Junction.hpp"
#include "cgatools/util/GenericHistogram.hpp"
#include <string>
#include <vector>

Go to the source code of this file.

Classes
class	cgatools::junctions::JunctionCounterFields
class	cgatools::junctions::CounterSet< Fields, Type >
class	cgatools::junctions::JuctionStatisticsCollector
Namespaces
namespace	cgatools
	Namespace containing the libcgatools API.
Defines
#define	ADD_STAT_PARAMS()
#define	ADD_STAT_PARAM(p)   p,
#define	ADD_STAT_PARAM(p)   +1

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Detailed Description

This file contains code that collects diferent junction file statistics.

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Define Documentation

 

#define ADD_STAT_PARAMS

(

)

Value:

ADD_STAT_PARAM(TOTAL_JUNCTIONS) \
        ADD_STAT_PARAM(LEFT_SIDES_EQUAL) \
        ADD_STAT_PARAM(RIGHT_SIDES_EQUAL) \
        ADD_STAT_PARAM(BOTH_SIDES_EQUAL) \
        ADD_STAT_PARAM(LEFT_UNKNOWN) \
        ADD_STAT_PARAM(RIGHT_UNKNOWN) \
        ADD_STAT_PARAM(INTERCHOMOSOMIAL) \
        ADD_STAT_PARAM(STRAND_BOTH_POSITIVE) \
        ADD_STAT_PARAM(STRAND_LEFT_NEGATIVE) \
        ADD_STAT_PARAM(STRAND_RIGHT_NEGATIVE) \
        ADD_STAT_PARAM(STRAND_BOTH_NEGATIVE)