, including all inherited members.
| addCall(const Call &call) | cgatools::variants::Locus | |
| clearCalls() | cgatools::variants::Locus | |
| computeReadCounts(int32_t *allele1ReadCount, int32_t *allele2ReadCount, int32_t *referenceAlleleReadCount, int32_t *totalReadCount, cgdata::EvidenceReader &evidence) const | cgatools::variants::Locus | |
| extras_ | cgatools::variants::Locus | |
| getAlleles() const | cgatools::variants::Locus | [inline] |
| getAllXRef() const | cgatools::variants::Locus | |
| getAnnotation(const std::string &name) const | cgatools::variants::Locus | |
| getCalls() const | cgatools::variants::Locus | [inline] |
| getCalls() | cgatools::variants::Locus | [inline] |
| getId() const | cgatools::variants::Locus | |
| getPloidy() const | cgatools::variants::Locus | |
| getRange() const | cgatools::variants::Locus | [inline] |
| getReference() const | cgatools::variants::Locus | [inline] |
| getType() const | cgatools::variants::Locus | |
| getZygosity() const | cgatools::variants::Locus | |
| hasAnnotation(const std::string &name) const | cgatools::variants::Locus | |
| hasNoCalls() const | cgatools::variants::Locus | |
| initFromCalls(bool relaxedReferenceValidation=true) | cgatools::variants::Locus | |
| isNoCallLocus() const | cgatools::variants::Locus | |
| isRefCallLocus() const | cgatools::variants::Locus | |
| isRefConsistent() const | cgatools::variants::Locus | |
| locationCalls(const Location &loc, std::vector< std::pair< char, const Call * > > &calls) const | cgatools::variants::Locus | |
| Locus() | cgatools::variants::Locus | [inline] |
| Locus(const CrrFile &crr) | cgatools::variants::Locus | [inline] |
| Locus(const Locus &other) | cgatools::variants::Locus | |
| operator=(const Locus &other) | cgatools::variants::Locus | |
| reorderAlleles() | cgatools::variants::Locus | |
| setHapLink(size_t alleleOffset, const std::string &hapLink) | cgatools::variants::Locus | |
| setId(boost::uint32_t locusId) | cgatools::variants::Locus | |
| setLocusAnnotations(const LocusAnnotations &ann) | cgatools::variants::Locus | |
| setRange(const Range &range) | cgatools::variants::Locus | |
| setType(const std::string &olplType) | cgatools::variants::Locus | |
| writeAsOneLine(std::ostream &out, bool writeExtras=true, char sep= '\t') const | cgatools::variants::Locus | |
| writeOneLineFileHeader(std::ostream &out, bool alleleSpecificXRef, char sep= '\t') (defined in cgatools::variants::Locus) | cgatools::variants::Locus | [static] |
| xRefIsAlleleSpecific() const | cgatools::variants::Locus | |
1.6.2
