cgatools::variants::Call Member List

This is the complete list of members for cgatools::variants::Call, including all inherited members.

addFieldParsers(util::DelimitedFile &df, const reference::CrrFile &crr)	cgatools::variants::Call
ALL_HAPLOTYPES	cgatools::variants::Call	[static]
alleleSeq_	cgatools::variants::Call
Call()	cgatools::variants::Call
calledSequence(const reference::CrrFile &crr) const	cgatools::variants::Call
EMPTY_SCORE	cgatools::variants::Call	[static]
getHeader(const char separator= '\t')	cgatools::variants::Call	[static]
hapLink_	cgatools::variants::Call
haplotype_	cgatools::variants::Call
hasNoCalls() const	cgatools::variants::Call
isRefConsistent(const reference::CrrFile &crr) const	cgatools::variants::Call
locus_	cgatools::variants::Call
parseVarQuality(const char *first, const char *last)	cgatools::variants::Call	[static]
ploidy_	cgatools::variants::Call
range_	cgatools::variants::Call
reference_	cgatools::variants::Call
refSequence(const reference::CrrFile &crr) const	cgatools::variants::Call
UNKNOWN_PLOIDY	cgatools::variants::Call	[static]
VAR_QUALITY_EMPTY enum value (defined in cgatools::variants::Call)	cgatools::variants::Call
VAR_QUALITY_HIGH enum value (defined in cgatools::variants::Call)	cgatools::variants::Call
VAR_QUALITY_LOW enum value (defined in cgatools::variants::Call)	cgatools::variants::Call
VarQuality enum name (defined in cgatools::variants::Call)	cgatools::variants::Call
varQuality_	cgatools::variants::Call
varQualityToString(const VarQuality varQuality)	cgatools::variants::Call	[static]
varScoreEAF_	cgatools::variants::Call
varScoreVAF_	cgatools::variants::Call
varType_	cgatools::variants::Call
write(std::ostream &out, const reference::CrrFile &crr, const char sep= '\t') const	cgatools::variants::Call
xRef_	cgatools::variants::Call