cgatools::variants::VariantFileVcfRecordWriter Member List

This is the complete list of members for cgatools::variants::VariantFileVcfRecordWriter, including all inherited members.

addSubFieldHeaderRecords(std::vector< cgatools::conv::VcfSubFieldHeaderRecord > &result) const (defined in cgatools::variants::VariantFileVcfRecordWriter)	cgatools::variants::VariantFileVcfRecordWriter
getAlleleCount(size_t alleleIdx) const (defined in cgatools::variants::VariantFileVcfRecordWriter)	cgatools::variants::VariantFileVcfRecordWriter
getLocation() const	cgatools::variants::VariantFileVcfRecordWriter	[virtual]
getRecord() const (defined in cgatools::variants::VariantFileVcfRecordWriter)	cgatools::variants::VariantFileVcfRecordWriter
getSampleCount() const (defined in cgatools::variants::VariantFileVcfRecordWriter)	cgatools::variants::VariantFileVcfRecordWriter
getSomaticStatusAnnotation(size_t gIdx, const std::vector< std::vector< SubFieldCall > > &calls) const (defined in cgatools::variants::VariantFileVcfRecordWriter)	cgatools::variants::VariantFileVcfRecordWriter
getVcfChromosomeName(size_t chromosomeId, const cgatools::reference::CrrFile &crr)	cgatools::conv::VcfRecordWriter	[static]
setLocus(const cgatools::reference::Range &range, const Superlocus &sl, std::vector< PhasedHypothesis > &hyp) (defined in cgatools::variants::VariantFileVcfRecordWriter)	cgatools::variants::VariantFileVcfRecordWriter
VariantFileVcfRecordWriter(const std::vector< boost::shared_ptr< VariantFileIterator > > &var, const std::vector< std::string > fieldNames, const cgatools::reference::CrrFile &crr, const std::string &calibPrefix) (defined in cgatools::variants::VariantFileVcfRecordWriter)	cgatools::variants::VariantFileVcfRecordWriter
writeAlt(std::ostream &out) const	cgatools::variants::VariantFileVcfRecordWriter	[virtual]
writeFilter(std::ostream &out) const	cgatools::conv::VcfRecordWriter	[inline, virtual]
writeFormat(std::ostream &out) const	cgatools::variants::VariantFileVcfRecordWriter	[virtual]
writeId(std::ostream &out) const	cgatools::conv::VcfRecordWriter	[inline, virtual]
writeInfo(std::ostream &out) const	cgatools::variants::VariantFileVcfRecordWriter	[virtual]
writeQual(std::ostream &out) const	cgatools::conv::VcfRecordWriter	[inline, virtual]
writeRecord(std::ostream &out, const cgatools::reference::CrrFile &crr, size_t sampleCount) const	cgatools::conv::VcfRecordWriter
writeRef(std::ostream &out) const	cgatools::variants::VariantFileVcfRecordWriter	[virtual]
writeSample(std::ostream &out, size_t gIdx) const	cgatools::variants::VariantFileVcfRecordWriter	[virtual]