cgatools::reference::RepeatMaskerStore Member List

This is the complete list of members for cgatools::reference::RepeatMaskerStore, including all inherited members.

Base typedef	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[protected]
bindColumns(util::DelimitedFile &df, reference::Range &range, RepeatMaskerAnnotation &data) (defined in cgatools::reference::RepeatMaskerStore)	cgatools::reference::RepeatMaskerStore	[inline]
bindRangeColumns(util::DelimitedFile &df, reference::Range &range, const std::string &chrColName="chromosome", const std::string &begColName="begin", const std::string &endColName="end")	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[inline, protected]
bindRangeMidpointColumns(util::DelimitedFile &df, reference::Range &range, const std::string &chrColName="chromosome", const std::string &midpointColName="position")	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[inline, protected]
crr_ (defined in cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >)	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[protected]
data_ (defined in cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >)	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[protected]
DataStore typedef (defined in cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >)	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >
getMetadata() const	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[inline]
intersect(const reference::Range &range, std::vector< QueryResultType > &result) const	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[inline]
load(const std::string &fn, char delimiter= '\t')	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[inline, protected]
QueryResultType typedef (defined in cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >)	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >
RangeAnnotationStore(const reference::CrrFile &crr) (defined in cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >)	cgatools::reference::RangeAnnotationStore< RepeatMaskerStore, RepeatMaskerAnnotation >	[inline]
RepeatMaskerStore(const reference::CrrFile &crr, const std::string &fn) (defined in cgatools::reference::RepeatMaskerStore)	cgatools::reference::RepeatMaskerStore	[inline]