cgatools::cgdata::CnvDetailStore Member List

This is the complete list of members for cgatools::cgdata::CnvDetailStore, including all inherited members.

Base typedef	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[protected]
bindColumns(util::DelimitedFile &df, reference::Range &range, CnvDetailData &data)	cgatools::cgdata::CnvDetailStore
bindRangeColumns(util::DelimitedFile &df, reference::Range &range, const std::string &chrColName="chromosome", const std::string &begColName="begin", const std::string &endColName="end")	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[inline, protected]
bindRangeMidpointColumns(util::DelimitedFile &df, reference::Range &range, const std::string &chrColName="chromosome", const std::string &midpointColName="position")	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[inline, protected]
CnvDetailStore(const reference::CrrFile &crr, const GenomeMetadata &exp, bool isDiploid, bool isSomatic)	cgatools::cgdata::CnvDetailStore	[inline]
crr_ (defined in cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >)	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[protected]
data_ (defined in cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >)	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[protected]
DataStore typedef (defined in cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >)	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >
getBestOverlappingDetail(const reference::Range &r) const	cgatools::cgdata::CnvDetailStore
getMetadata() const	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[inline]
hasCalledLevel() const	cgatools::cgdata::CnvDetailStore	[inline]
hasCalledPloidy() const	cgatools::cgdata::CnvDetailStore	[inline]
hasLAF() const	cgatools::cgdata::CnvDetailStore	[inline]
intersect(const reference::Range &range, std::vector< QueryResultType > &result) const	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[inline]
load(const std::string &fn, char delimiter= '\t')	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[inline, protected]
QueryResultType typedef (defined in cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >)	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >
RangeAnnotationStore(const reference::CrrFile &crr) (defined in cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >)	cgatools::reference::RangeAnnotationStore< CnvDetailStore, CnvDetailData >	[inline]
trimTree()	cgatools::cgdata::CnvDetailStore