cgatools::cgdata::GenomeMetadata Member List

This is the complete list of members for cgatools::cgdata::GenomeMetadata, including all inherited members.

GenomeMetadata(const std::string &root) (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getAsmId() const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getCnvDetailsDiploidFileName(bool exnOnFail=true) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getCnvDetailsNondiploidFileName(bool exnOnFail=true) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getCnvDetailsSomaticDiploidFileName(bool exnOnFail=true) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getCnvDetailsSomaticNondiploidFileName(bool exnOnFail=true) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getCnvSegmentsDiploidFileName(bool exnOnFail=true) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getCnvSegmentsNondiploidFileName(bool exnOnFail=true) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getEvidenceDnbsFileName(const std::string &chromName) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getEvidenceIntervalsFileName(const std::string &chromName) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getFormatVersion() const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getGeneFileName() const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getGenomeReference() const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getJunctionsFileName(bool highConfidence=false) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getLaneDir(const std::string &laneName) const	cgatools::cgdata::GenomeMetadata
getLaneNames() const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getLibraryMetadata(const std::string &libraryName) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getLibraryName(const std::string &laneName) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getLibraryNames() const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getMappingsFileName(const std::string &laneBatchId) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getMasterVarFileName(bool exnOnFail=true) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getMobileElementInsertionFileName() const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getNcRNAFileName() const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getReadsFileName(const std::string &laneBatchId) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata
getReferenceSupportFileName(const std::string &chromName) const (defined in cgatools::cgdata::GenomeMetadata)	cgatools::cgdata::GenomeMetadata