cgatools::copynumber::CnvFileVcfRecordWriter Member List

This is the complete list of members for cgatools::copynumber::CnvFileVcfRecordWriter, including all inherited members.

CnvFileVcfRecordWriter(const std::vector< std::string > cnvFieldNames, const cgatools::reference::CrrFile &crr, int numGenomes, bool someSomatic, bool someNonsomaticLAF) (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter
getDiploidRange(int gIdx) const (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter	[inline]
getLocation() const	cgatools::copynumber::CnvFileVcfRecordWriter	[virtual]
getNondiploidRange(int gIdx) const (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter	[inline]
getSomaticRange(int gIdx) const (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter	[inline]
getVcfChromosomeName(size_t chromosomeId, const cgatools::reference::CrrFile &crr)	cgatools::conv::VcfRecordWriter	[static]
isDeferred(int gIdx) const (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter	[inline]
setDeferred(int gIdx, bool status) (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter	[inline]
setDiploidData(diploidData &data, int gIdx) (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter
setNondiploidData(nondiploidData &data, int gIdx) (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter
setSomaticData(somaticData &data, int gIdx) (defined in cgatools::copynumber::CnvFileVcfRecordWriter)	cgatools::copynumber::CnvFileVcfRecordWriter
writeAlt(std::ostream &out) const	cgatools::copynumber::CnvFileVcfRecordWriter	[virtual]
writeFilter(std::ostream &out) const	cgatools::conv::VcfRecordWriter	[inline, virtual]
writeFormat(std::ostream &out) const	cgatools::copynumber::CnvFileVcfRecordWriter	[virtual]
writeId(std::ostream &out) const	cgatools::conv::VcfRecordWriter	[inline, virtual]
writeInfo(std::ostream &out) const	cgatools::copynumber::CnvFileVcfRecordWriter	[virtual]
writeQual(std::ostream &out) const	cgatools::conv::VcfRecordWriter	[inline, virtual]
writeRecord(std::ostream &out, const cgatools::reference::CrrFile &crr, size_t sampleCount) const	cgatools::conv::VcfRecordWriter
writeRef(std::ostream &out) const	cgatools::copynumber::CnvFileVcfRecordWriter	[virtual]
writeSample(std::ostream &out, size_t gIdx) const	cgatools::copynumber::CnvFileVcfRecordWriter	[virtual]
~VcfRecordWriter() (defined in cgatools::conv::VcfRecordWriter)	cgatools::conv::VcfRecordWriter	[inline, virtual]