cgatools::junctions::JunctionVcfRecordWriter Member List

This is the complete list of members for cgatools::junctions::JunctionVcfRecordWriter, including all inherited members.

alt_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
filter_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
format_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
getLocation() const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
getVcfChromosomeName(size_t chromosomeId, const cgatools::reference::CrrFile &crr)	cgatools::conv::VcfRecordWriter	[static]
id_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
info_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
JunctionVcfRecordSource (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[friend]
JunctionVcfRecordWriter() (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter
pos_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
qual_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
ref_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
sample_ (defined in cgatools::junctions::JunctionVcfRecordWriter)	cgatools::junctions::JunctionVcfRecordWriter	[protected]
writeAlt(std::ostream &out) const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
writeFilter(std::ostream &out) const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
writeFormat(std::ostream &out) const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
writeId(std::ostream &out) const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
writeInfo(std::ostream &out) const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
writeQual(std::ostream &out) const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
writeRecord(std::ostream &out, const cgatools::reference::CrrFile &crr, size_t sampleCount) const	cgatools::conv::VcfRecordWriter
writeRef(std::ostream &out) const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
writeSample(std::ostream &out, size_t gIdx) const	cgatools::junctions::JunctionVcfRecordWriter	[virtual]
~VcfRecordWriter() (defined in cgatools::conv::VcfRecordWriter)	cgatools::conv::VcfRecordWriter	[inline, virtual]