cgatools::mapping::GapProbabilityAndConcordanceExtractor Member List

This is the complete list of members for cgatools::mapping::GapProbabilityAndConcordanceExtractor, including all inherited members.

alleleAligner_ (defined in cgatools::mapping::GapAndConcordanceExtractor)	cgatools::mapping::GapAndConcordanceExtractor	[protected]
concordance_ (defined in cgatools::mapping::GapAndConcordanceExtractor)	cgatools::mapping::GapAndConcordanceExtractor
endOffsetInAllele_ (defined in cgatools::mapping::GapAndConcordanceExtractor)	cgatools::mapping::GapAndConcordanceExtractor
GapAndConcordanceExtractor(const AlleleSequenceAligner &alleleAligner) (defined in cgatools::mapping::GapAndConcordanceExtractor)	cgatools::mapping::GapAndConcordanceExtractor	[inline]
gapProbability_ (defined in cgatools::mapping::GapProbabilityAndConcordanceExtractor)	cgatools::mapping::GapProbabilityAndConcordanceExtractor
GapProbabilityAndConcordanceExtractor(const AlleleSequenceAligner &alleleAligner, boost::array< boost::shared_ptr< GapEst::GapsEstimator >, 2 > gapsEstimators)	cgatools::mapping::GapProbabilityAndConcordanceExtractor	[inline]
gaps_ (defined in cgatools::mapping::GapAndConcordanceExtractor)	cgatools::mapping::GapAndConcordanceExtractor
gapsEstimators_ (defined in cgatools::mapping::GapProbabilityAndConcordanceExtractor)	cgatools::mapping::GapProbabilityAndConcordanceExtractor	[protected]
halfDnbSize_ (defined in cgatools::mapping::GapAndConcordanceExtractor)	cgatools::mapping::GapAndConcordanceExtractor	[protected]
mismatches_ (defined in cgatools::mapping::GapAndConcordanceExtractor)	cgatools::mapping::GapAndConcordanceExtractor
run(uint8_t side, bool strand, int32_t offsetInAllele, const std::string &alignmentCigar, const std::string &readSequence, const std::string &readScores) (defined in cgatools::mapping::GapProbabilityAndConcordanceExtractor)	cgatools::mapping::GapProbabilityAndConcordanceExtractor