cgatools::mapping::SamGeneratorConfig Member List

This is the complete list of members for cgatools::mapping::SamGeneratorConfig, including all inherited members.

addAlternativeMappings_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
addAlternativeMates_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
addMateSequenceAndScore_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
addMateSequenceAndScoreIfNotLocallyAvailable_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
mateSvCandidates_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
maxConsistentRange_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
packCigar_	cgatools::mapping::SamGeneratorConfig
primaryMappingsOnly_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
printAlleleInfo_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
removePaddingAtCigarEnds_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig
SamGeneratorConfig() (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig	[inline]
skipNotMapped_ (defined in cgatools::mapping::SamGeneratorConfig)	cgatools::mapping::SamGeneratorConfig