cgatools::variants::SuperlocusIterator Member List

This is the complete list of members for cgatools::variants::SuperlocusIterator, including all inherited members.
eof() const cgatools::variants::SuperlocusIterator [inline]
getPrecedingRefStart() const cgatools::variants::SuperlocusIterator [inline]
ITER_CIRCULAR_MATCHING enum valuecgatools::variants::SuperlocusIterator
ITER_INCONSISTENT_ONLY enum valuecgatools::variants::SuperlocusIterator
IterationFlags enum namecgatools::variants::SuperlocusIterator
operator*() const cgatools::variants::SuperlocusIterator [inline]
operator++()cgatools::variants::SuperlocusIterator [inline]
operator->() const cgatools::variants::SuperlocusIterator [inline]
seekFirst()cgatools::variants::SuperlocusIterator
setVariantFile(VariantFileIterator &iter)cgatools::variants::SuperlocusIterator
setVariantFiles(VariantFileIterator &iterA, VariantFileIterator &iterB)cgatools::variants::SuperlocusIterator
setVariantFiles(const std::vector< VariantFileIterator * > iters)cgatools::variants::SuperlocusIterator
skipToVariant(const reference::Range &range, const std::string &alleleSeq)cgatools::variants::SuperlocusIterator
SuperlocusIterator(uint32_t extend3Mers=4, uint32_t extendBases=0, int iterationFlags=ITER_INCONSISTENT_ONLY|ITER_CIRCULAR_MATCHING)cgatools::variants::SuperlocusIterator
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