cgatools::variants::Call Member List

This is the complete list of members for cgatools::variants::Call, including all inherited members.

addFieldParsers(util::DelimitedFile &df, const reference::CrrFile &crr)	cgatools::variants::Call
addVarFilter(const std::string &filter)	cgatools::variants::Call
ALL_HAPLOTYPES	cgatools::variants::Call	[static]
alleleFreq_	cgatools::variants::Call
alleleSeq_	cgatools::variants::Call
alternativeCalls_	cgatools::variants::Call
Call()	cgatools::variants::Call
calledSequence(const reference::CrrFile &crr) const	cgatools::variants::Call
EMPTY_SCORE	cgatools::variants::Call	[static]
getHeader(const char separator= '\t')	cgatools::variants::Call	[static]
hapLink_	cgatools::variants::Call
haplotype_	cgatools::variants::Call
hasNoCalls() const	cgatools::variants::Call
isRefConsistent(const reference::CrrFile &crr) const	cgatools::variants::Call
locus_	cgatools::variants::Call
parseAlternativeCalls(const char *first, const char *last, std::vector< AlternativeCall > &alternativeCalls)	cgatools::variants::Call	[static]
parseVarFilter(const char *first, const char *last, std::vector< std::string > &varFilter)	cgatools::variants::Call	[static]
ploidy_	cgatools::variants::Call
range_	cgatools::variants::Call
reference_	cgatools::variants::Call
refSequence(const reference::CrrFile &crr) const	cgatools::variants::Call
UNKNOWN_PLOIDY	cgatools::variants::Call	[static]
varFilter_	cgatools::variants::Call
varScoreEAF_	cgatools::variants::Call
varScoreVAF_	cgatools::variants::Call
varType_	cgatools::variants::Call
write(std::ostream &out, const reference::CrrFile &crr, const char sep= '\t') const	cgatools::variants::Call
xRef_	cgatools::variants::Call