Allele.hpp [code] | |
AlleleDiffSegment.hpp [code] | |
BaseUtil.hpp [code] | File containing definition of the BaseUtil class |
Call.hpp [code] | |
CallDiff.hpp [code] | |
CallDiffResult.hpp [code] | |
CgiData.hpp [code] | |
ChromosomeIdField.hpp [code] | |
Command.hpp [code] | File containing definition of the Command class |
CompactDnaSequence.hpp [code] | File containing definitions CompactDnaSequence class |
core.hpp [code] | First header included by all source files |
Crr2Fasta.hpp [code] | |
CrrFile.hpp [code] | File containing definitions CrrFile class |
CrrFileWriter.hpp [code] | File containing definition of the CrrFileWriter class |
DecodeCrr.hpp [code] | |
DelimitedFile.hpp [code] | |
DelimitedLineParser.hpp [code] | File containing definitions of DelimitedLineParser and general purpose DelimitedFieldParsers |
Evidence2Sam.hpp [code] | |
EvidenceReader.hpp [code] | |
Exception.hpp [code] | File containing Exception class and assertion macros |
Fasta2Crr.hpp [code] | |
ListCrr.hpp [code] | |
ListVariants.hpp [code] | |
Locus.hpp [code] | |
mainpage.hpp [code] | File containing documentation for the doxygen main page |
Map2Sam.hpp [code] | |
Md5.hpp [code] | File containing Md5 class for computing md5 checksums |
parse.hpp [code] | File containing general purpose functions parsing strings |
PhasedAllele.hpp [code] | |
PhasedHypothesis.hpp [code] | |
range.hpp [code] | File containing definitions of Location and Range classes |
RangeSet.hpp [code] | File containing definitions of RangeSet class |
ReferenceSupportReader.hpp [code] | |
SnpDiff.hpp [code] | |
Streams.hpp [code] | File containing definitions of InputStream, OutputStream, CompressedInputStream, and CompressedOutputStream |
Superlocus.hpp [code] | |
SuperlocusIterator.hpp [code] | |
TestVariants.hpp [code] | |
VariantFileIterator.hpp [code] |