cgatools::junctions::FullGenomeJunctionComparator Member List

This is the complete list of members for cgatools::junctions::FullGenomeJunctionComparator, including all inherited members.

compare(const JunctionsArray &junctions) const (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
compareBySide(const JunctionsArray &junctions, int firstSide, JunctionIts &oneSideCompatible, JunctionIts &twoSidesCompatible, JunctionIts &twoSidesIncompatible) const (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
distanceTolerance_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
FullGenomeJunctionComparator(uint32_t distanceTolerance, const std::vector< size_t > &scoreThresholds, std::ostream &outCommonJunctionsStream) (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[inline]
getCompatibility(const Junction &j0, const Junction &j1) const (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[inline]
isSideCompatible(const Junction &j0, const Junction &j1, int side) const (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[inline]
JunctionsArray typedef (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
JunctionsItsArray typedef (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
mergeResults(JunctionsItsArray &input, JunctionIts &output) const (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
outCommonJunctionsStream_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
printResults(const JunctionIts &junctionIts, std::ostream &out) const (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
scoreThresholds_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
SEPARATOR (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[static]