cgatools::junctions::FullGenomeJunctionComparator Class Reference

List of all members.

Public Types
typedef std::vector< Junctions >	JunctionsArray
typedef std::vector< JunctionIts >	JunctionsItsArray
Public Member Functions
	FullGenomeJunctionComparator (uint32_t distanceTolerance, const std::vector< size_t > &scoreThresholds, std::ostream &outCommonJunctionsStream)
double	getCompatibility (const Junction &j0, const Junction &j1) const
bool	isSideCompatible (const Junction &j0, const Junction &j1, int side) const
void	compare (const JunctionsArray &junctions) const
void	compareBySide (const JunctionsArray &junctions, int firstSide, JunctionIts &oneSideCompatible, JunctionIts &twoSidesCompatible, JunctionIts &twoSidesIncompatible) const
void	mergeResults (JunctionsItsArray &input, JunctionIts &output) const
void	printResults (const JunctionIts &junctionIts, std::ostream &out) const
Static Public Attributes
static const char	SEPARATOR = '\t'
Protected Attributes
uint32_t	distanceTolerance_
std::vector< size_t >	scoreThresholds_
std::ostream &	outCommonJunctionsStream_

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The documentation for this class was generated from the following file:

• JunctionCompare.hpp