cgatools::junctions::Junction Class Reference

List of all members.

Public Member Functions
	Junction (const JunctionId &, const JunctionSideSection &leftSection, const JunctionTransitionSection &, const JunctionSideSection &rightSection, const JunctionScore &score=JunctionScore())
	Junction (const JunctionId &, const boost::array< JunctionSideSection, 2 > &, const JunctionTransitionSection &, const JunctionScore &score=JunctionScore())
	Junction (const JunctionId &, const JunctionSideSection &leftSection, const JunctionSideSection &rightSection, const JunctionScore &score=JunctionScore())
	Junction (const JunctionId &, const boost::array< JunctionSideSection, 2 > &, const JunctionScore &score=JunctionScore())
	Junction (const JunctionId &, const JunctionSideSection &leftSection, const JunctionTransitionSection &, const JunctionScore &score=JunctionScore())
	Junction (const JunctionId &, const JunctionTransitionSection &, const JunctionSideSection &rightSection, const JunctionScore &score=JunctionScore())
	Junction (const std::string &, const ReferenceGenome &reference, const std::string &separator)
void	addComment (const std::string &)
bool	isCanonical () const
void	canonicalize ()
bool	isSemiJunction () const
void	reverseComplement ()
Location	position () const
void	removeDuplicateComments ()
bool	operator< (const Junction &that) const
int	computeDistance (const ReferenceGenome &) const
void	read (const std::vector< std::string > &, const ReferenceGenome &)
void	write (std::ostream &, const ReferenceGenome &, const std::string &separator) const
Public Attributes
JunctionId	id_
boost::array < JunctionSideSection, 2 >	sideSections_
JunctionTransitionSection	transitionSection_
JunctionScore	score_
std::vector< std::string >	comments_

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The documentation for this class was generated from the following file:

• Junction.hpp