, including all inherited members.
| addComment(const std::string &) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| canonicalize() (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| comments_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| computeDistance(const ReferenceGenome &) const (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| id_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| isCanonical() const (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| isSemiJunction() const (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction() (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction(const JunctionId &, const JunctionSideSection &leftSection, const JunctionTransitionSection &, const JunctionSideSection &rightSection, const JunctionScore &score=JunctionScore()) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction(const JunctionId &, const boost::array< JunctionSideSection, 2 > &, const JunctionTransitionSection &, const JunctionScore &score=JunctionScore()) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction(const JunctionId &, const JunctionSideSection &leftSection, const JunctionSideSection &rightSection, const JunctionScore &score=JunctionScore()) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction(const JunctionId &, const boost::array< JunctionSideSection, 2 > &, const JunctionScore &score=JunctionScore()) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction(const JunctionId &, const JunctionSideSection &leftSection, const JunctionTransitionSection &, const JunctionScore &score=JunctionScore()) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction(const JunctionId &, const JunctionTransitionSection &, const JunctionSideSection &rightSection, const JunctionScore &score=JunctionScore()) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction(const std::string &, const ReferenceGenome &reference, const std::string &separator) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| operator<(const Junction &that) const (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| position() const (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| read(const std::vector< std::string > &, const ReferenceGenome &) (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| removeDuplicateComments() (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| reverseComplement() (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| score_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| sideSections_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| transitionSection_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| write(std::ostream &, const ReferenceGenome &, const std::string &separator) const (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
1.6.2
