cgatools::junctions::JunctionFile Member List

This is the complete list of members for cgatools::junctions::JunctionFile, including all inherited members.
add(const Junction &) (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
canonicalize() (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
header_ (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile [static]
JunctionFile(const std::string &name, const ReferenceGenome &, std::string separator="\t") (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
JunctionFile(std::string separator="\t") (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
junctions_ (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
read(const std::string &name, const ReferenceGenome &reference, std::string extraId="") (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
removeDuplicateComments() (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
separator_ (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
sort() (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
write(const std::string &name, const ReferenceGenome &) (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
writeSortedWithoutReplication(const std::string &name, const ReferenceGenome &) (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
writeSortedWithReplication(const std::string &name, const ReferenceGenome &) (defined in cgatools::junctions::JunctionFile)cgatools::junctions::JunctionFile
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