cgatools::junctions::JunctionFile Class Reference

List of all members.

Public Member Functions
	JunctionFile (const std::string &name, const ReferenceGenome &, std::string separator="\t")
	JunctionFile (std::string separator="\t")
void	read (const std::string &name, const ReferenceGenome &reference, std::string extraId="")
void	write (const std::string &name, const ReferenceGenome &)
void	writeSortedWithoutReplication (const std::string &name, const ReferenceGenome &)
void	writeSortedWithReplication (const std::string &name, const ReferenceGenome &)
void	add (const Junction &)
void	canonicalize ()
void	sort ()
void	removeDuplicateComments ()
Public Attributes
Junctions	junctions_
std::string	separator_
Static Public Attributes
static const std::string	header_

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The documentation for this class was generated from the following file:

• Junction.hpp