cgatools::util::DelimitedFile Class Reference

Used to parse files delimited in the way found in a typical Complete Genomics export file. More...

#include <DelimitedFile.hpp>

List of all members.

Public Types
enum	FieldParserType { REQUIRED = 0, OPTIONAL = 1 }
typedef DelimitedFileMetadata	Metadata
typedef DelimitedLineParser::EmptyFieldHandling	EmptyFieldHandling
Public Member Functions
	DelimitedFile (std::istream &in, char delimiter= '\t', EmptyFieldHandling emptyHandling=DelimitedLineParser::PROCESS_EMPTY_FIELDS)
template<class Field >
void	addField (const Field &parser, FieldParserType ft=REQUIRED)
void	addAllFields (std::vector< std::string > &fields)
bool	next ()
const Metadata &	getMetadata () const
const std::vector< std::string > &	getColumnHeaders () const
size_t	getFieldOffset (const std::string &fieldName) const
bool	hasField (const std::string &fieldName) const
DelimitedLineParser &	getDelimitedLineParser ()
const std::string &	getLine () const

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Detailed Description

Used to parse files delimited in the way found in a typical Complete Genomics export file.

Example:

 string chromosome;
 uint32_t offset;
 DelimitedFile df(cin);
 df.addField(StringField("chromosome", &chromosome));
 df.addField(ValueField<uint32_t>("offset", &offset));
 while (df.next())
     cout << chromosome << "\t" << offset << endl;

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The documentation for this class was generated from the following file:

• DelimitedFile.hpp