cgatools::variants::AlleleDiffSegment Struct Reference

Structure to keep track of a segment the reference, as well as calls aligned to that segment for two calldiff files. More...

#include <AlleleDiffSegment.hpp>

List of all members.

Public Member Functions
	AlleleDiffSegment (const std::pair< uint32_t, uint32_t > &lhs, const std::pair< uint32_t, uint32_t > &rhs, const std::pair< uint32_t, uint32_t > &ref, const std::pair< uint32_t, uint32_t > &lhsCalls, const std::pair< uint32_t, uint32_t > &rhsCalls)
Public Attributes
std::pair< uint32_t, uint32_t >	lhs_
	pos in PhasedAllele::allele_
std::pair< uint32_t, uint32_t >	rhs_
	pos in PhasedAllele::allele_
std::pair< uint32_t, uint32_t >	ref_
	pos in reference sequence
std::pair< uint32_t, uint32_t >	lhsCalls_
	pos in PhasedAllele::calls_
std::pair< uint32_t, uint32_t >	rhsCalls_
	pos in PhasedAllele::calls_

---

Detailed Description

Structure to keep track of a segment the reference, as well as calls aligned to that segment for two calldiff files.

This is used for narrowing the range of non-identical PhasedAllele instances to specific calls.

---

The documentation for this struct was generated from the following file:

• AlleleDiffSegment.hpp