cgatools::command Namespace Reference

Namespace for command line utility classes. More...

Classes
class	CallDiff
class	Command
	The base class for writing new commands. More...
class	Crr2Fasta
class	DecodeCrr
class	Evidence2SamConfig
class	Evidence2Sam
class	Cigar
	Provides support for manipulations on SAM/BAM and CGI Evidence CIGAR. More...
class	SamSequenceSplitter
class	Fasta2Crr
class	Join
class	JunctionCmpConfig
class	JunctionCmp
class	JunctionDiffConfig
class	JunctionDiff
class	JunctionTypeConfig
class	JunctionType
class	ListCrr
class	ListVariants
class	Map2SamConfig
class	Map2Sam
class	SnpDiff
class	TestVariants
class	VarFileCombine

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Detailed Description

Namespace for command line utility classes.