EvidenceCache.hpp File Reference

#include "cgatools/core.hpp"
#include "cgatools/util/Streams.hpp"
#include "cgatools/util/parse.hpp"
#include "cgatools/util/RangeSet.hpp"
#include <boost/filesystem/path.hpp>
#include <boost/ptr_container/ptr_map.hpp>
#include <boost/foreach.hpp>
#include <boost/lexical_cast.hpp>
#include "cgatools/cgdata/EvidenceReader.hpp"
#include "cgatools/cgdata/LibraryReader.hpp"
#include "cgatools/cgdata/Dnb.hpp"
#include "cgatools/mapping/GapsEstimator.hpp"

Go to the source code of this file.

Classes
class	cgatools::mapping::CacheOutStreams
class	cgatools::mapping::EvidenceCacheBuilder
class	cgatools::mapping::EvidenceCacheDnbRecord
class	cgatools::mapping::EvidenceCacheReader
Namespaces
namespace	cgatools
	Namespace containing the libcgatools API.
namespace	cgatools::reference
	Namespace for reference-specific utilities.
namespace	cgatools::util
	Namespace for general-purpose utilities.
Defines
#define	CGA_TOOLS_COMMAND_EVIDENCECACHE_HPP_   1
Typedefs
typedef std::multimap < uint64_t, EvidenceCacheDnbRecord >	cgatools::mapping::BatchRecords

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Detailed Description