| Allele.hpp [code] | |
| AlleleAlignment.hpp [code] | |
| AlleleDiffSegment.hpp [code] | |
| BaseUtil.hpp [code] | File containing definition of the BaseUtil class |
| Call.hpp [code] | |
| CallDiff.hpp [code] | |
| CallDiffMatchType.hpp [code] | |
| CallDiffResult.hpp [code] | |
| ChromosomeIdField.hpp [code] | |
| CnvSegmentStore.hpp [code] | |
| Command.hpp [code] | File containing definition of the Command class |
| CompactDnaSequence.hpp [code] | File containing definitions CompactDnaSequence class |
| core.hpp [code] | First header included by all source files |
| Crr2Fasta.hpp [code] | |
| CrrFile.hpp [code] | File containing definitions CrrFile class |
| CrrFileWriter.hpp [code] | File containing definition of the CrrFileWriter class |
| DecodeCrr.hpp [code] | |
| DelimitedFile.hpp [code] | |
| DelimitedLineParser.hpp [code] | File containing definitions of DelimitedLineParser and general purpose DelimitedFieldParsers |
| Dnb.hpp [code] | |
| Evidence2Cache.hpp [code] | |
| Evidence2Sam.hpp [code] | |
| EvidenceCache.hpp [code] | |
| EvidenceReader.hpp [code] | |
| EvidenceSamUtil.hpp [code] | |
| Exception.hpp [code] | File containing Exception class and assertion macros |
| Fasta2Crr.hpp [code] | |
| GapsEstimator.hpp [code] | |
| GeneDataStore.hpp [code] | |
| GenericHistogram.hpp [code] | |
| GenomeMetadata.hpp [code] | |
| IndirectComparator.hpp [code] | |
| Join.hpp [code] | |
| Junction.hpp [code] | This file contains definitions of classes used to manipulate junctions and files containing them |
| JunctionCmp.hpp [code] | |
| JunctionCompare.hpp [code] | This file contains definitions of classes used to compare sets of junctions |
| JunctionDiff.hpp [code] | |
| JunctionStat.hpp [code] | This file contains code that collects diferent junction file statistics |
| JunctionType.hpp [code] | |
| LibraryData.hpp [code] | |
| LibraryReader.hpp [code] | |
| ListCrr.hpp [code] | |
| ListVariants.hpp [code] | |
| Locus.hpp [code] | |
| mainpage.hpp [code] | File containing documentation for the doxygen main page |
| Map2Sam.hpp [code] | |
| Map2SamConverter.hpp [code] | |
| MapSamUtils.hpp [code] | |
| Md5.hpp [code] | File containing Md5 class for computing md5 checksums |
| MergedMap2Sam.hpp [code] | |
| MergeMap2SamConverter.hpp [code] | |
| parse.hpp [code] | File containing general purpose functions parsing strings |
| PhasedAllele.hpp [code] | |
| PhasedHypothesis.hpp [code] | |
| range.hpp [code] | File containing definitions of Location and Range classes |
| RangeAnnotationStore.hpp [code] | |
| RangeIntersector.hpp [code] | |
| RangeSet.hpp [code] | File containing definitions of RangeSet class |
| ReferenceSupportReader.hpp [code] | |
| RepeatMaskerStore.hpp [code] | |
| SamRecord.hpp [code] | |
| SnpDiff.hpp [code] | |
| Streams.hpp [code] | File containing definitions of InputStream, OutputStream, CompressedInputStream, and CompressedOutputStream |
| StringSet.hpp [code] | |
| Superlocus.hpp [code] | |
| SuperlocusIterator.hpp [code] | |
| TestVariants.hpp [code] | |
| VarFileCombine.hpp [code] | |
| VariantFileIterator.hpp [code] | |
1.6.2
