GapsEstimator.hpp File Reference

#include "cgatools/core.hpp"
#include "cgatools/reference/CrrFile.hpp"
#include "cgatools/cgdata/LibraryReader.hpp"
#include "cgatools/cgdata/Dnb.hpp"
#include "cgatools/util/BaseUtil.hpp"

Go to the source code of this file.

Classes
class	cgatools::mapping::GapEst::SequenceRetriever
	Retrieves sequence at a given offset from the end of the clone. More...
class	cgatools::mapping::GapEst::NoCallSequenceRetriever
	Retrieves all no-calls. More...
class	cgatools::mapping::GapEst::TemplateSequenceRetriever< TSequence >
	Retrieves sequence at a given offset from the end of the clone. More...
class	cgatools::mapping::GapEst::GapsEstimator
	Estimates wobble (small) gap probabilities, based on the sequence at a particular offset from the end of the clone. More...
Namespaces
namespace	cgatools
	Namespace containing the libcgatools API.
Typedefs
typedef cgdata::DnbStructure	cgatools::mapping::GapEst::ArmData
Functions
bool	cgatools::mapping::GapEst::isValidBase (char base)
uint8_t	cgatools::mapping::GapEst::baseTypeIndex (char base)

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Detailed Description