SamRecord.hpp File Reference

#include "cgatools/core.hpp"
#include <vector>
#include <string>

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Classes
class	cgatools::mapping::SamRecord
class	cgatools::mapping::SamFileHeaderBlock
	Used to manage sections of the SAM file header use "operator <<" to serialize the content into a SAM file. More...
class	cgatools::mapping::SamRecordGenerator
	Generates a SAM file record based on a given mapping record The final logic defining what goes into the output file is defined here. More...
class	cgatools::mapping::Cigar
	Provides support for manipulations on SAM/BAM and CGI Evidence CIGAR. More...
class	cgatools::mapping::Cigar::CigarElement
Namespaces
namespace	cgatools
	Namespace containing the libcgatools API.
namespace	cgatools::reference
	Namespace for reference-specific utilities.
Defines
#define	CGA_TOOLS_SAM_RECORD_HPP_   1
Typedefs
typedef std::pair< uint16_t, uint16_t >	cgatools::mapping::UInt16Pair

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Detailed Description