cgatools::mapping::SamRecord Class Reference

Inheritance diagram for cgatools::mapping::SamRecord:

List of all members.

Public Types
enum	RecordType { DEFAULT = 0, BASE_MAPPING, EVIDENCE, EVIDENCE_CACHE }
typedef std::vector< SamRecord * >	SamRecords
Public Member Functions
	SamRecord (const std::string &readName, bool isMapped, bool onNegativeStrand, bool isPrimary, uint8_t side, uint16_t chr, uint32_t position, const std::string &extCigar, uint8_t mappingQuality, const std::string &fullReadSequence, const std::string &fullReadScores, UInt16Pair sequenceStartAndLength)
bool	correctPosition (const reference::CrrFile &reference)
virtual bool	isConsistent () const
Public Attributes
RecordType	typeId_
std::string	readName_
bool	isMapped_
bool	onNegativeStrand_
bool	isPrimary_
bool	isGroupPrimary_
uint8_t	side_
uint16_t	chr_
uint32_t	position_
std::string	extCigar_
uint8_t	mappingQuality_
std::string	fullReadSequence_
std::string	fullReadScores_
bool	isSvCandidate_
UInt16Pair	sequenceStartAndLength_ [2]
SamRecords	mates_
Friends
std::ostream &	operator<< (std::ostream &ost, const SamRecord &r)

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The documentation for this class was generated from the following file:

• SamRecord.hpp