, including all inherited members.
  | Command(const std::string &name, const std::string &shortDescription, const std::string &formatVersionSupported, const std::string &longDescription) (defined in cgatools::command::Command) | cgatools::command::Command |  [protected] | 
  | formatDescription(const std::string &description, size_t indent, size_t maxLineLength, bool html) | cgatools::command::Command |  [static] | 
  | getCommandLine() const  (defined in cgatools::command::Command) | cgatools::command::Command |  | 
  | getHelpLineLength() (defined in cgatools::command::Command) | cgatools::command::Command |  [static] | 
  | getName() const | cgatools::command::Command |  [inline] | 
  | getShortDescription() const | cgatools::command::Command |  [inline] | 
  | help(std::ostream &out, bool html) | cgatools::command::Command |  | 
  | hiddenOptions_ (defined in cgatools::command::Command) | cgatools::command::Command |  [protected] | 
  | ListCrr(const std::string &name) (defined in cgatools::command::ListCrr) | cgatools::command::ListCrr |  | 
  | openStdin(const std::string &path) | cgatools::command::Command |  [protected] | 
  | openStdout(const std::string &path) | cgatools::command::Command |  [protected] | 
  | operator()(int argc, char **argv) | cgatools::command::Command |  | 
  | options_ (defined in cgatools::command::Command) | cgatools::command::Command |  [protected] | 
  | pipelineVersion_ (defined in cgatools::command::Command) | cgatools::command::Command |  [protected] | 
  | positionalOptions_ (defined in cgatools::command::Command) | cgatools::command::Command |  [protected] | 
  | requireParam(const po::variables_map &vm, const std::string ¶m) | cgatools::command::Command |  [protected] | 
  | run(po::variables_map &vm) | cgatools::command::ListCrr |  [protected, virtual] | 
  | ~Command() | cgatools::command::Command |  [inline, protected, virtual] |