cgatools::command::Map2Sam Member List

This is the complete list of members for cgatools::command::Map2Sam, including all inherited members.

Command(const std::string &name, const std::string &shortDescription, const std::string &formatVersionSupported, const std::string &longDescription) (defined in cgatools::command::Command)	cgatools::command::Command	[protected]
formatDescription(const std::string &description, size_t indent, size_t maxLineLength, bool html)	cgatools::command::Command	[static]
getCommandLine() const (defined in cgatools::command::Command)	cgatools::command::Command
getHelpLineLength() (defined in cgatools::command::Command)	cgatools::command::Command	[static]
getName() const	cgatools::command::Command	[inline]
getShortDescription() const	cgatools::command::Command	[inline]
help(std::ostream &out, bool html)	cgatools::command::Command
hiddenOptions_ (defined in cgatools::command::Command)	cgatools::command::Command	[protected]
Map2Sam(const std::string &name) (defined in cgatools::command::Map2Sam)	cgatools::command::Map2Sam
openStdin(const std::string &path)	cgatools::command::Command	[protected]
openStdout(const std::string &path)	cgatools::command::Command	[protected]
operator()(int argc, char **argv)	cgatools::command::Command
options_ (defined in cgatools::command::Command)	cgatools::command::Command	[protected]
pipelineVersion_ (defined in cgatools::command::Command)	cgatools::command::Command	[protected]
positionalOptions_ (defined in cgatools::command::Command)	cgatools::command::Command	[protected]
requireParam(const po::variables_map &vm, const std::string &param)	cgatools::command::Command	[protected]
run(po::variables_map &vm)	cgatools::command::Map2Sam	[protected, virtual]
~Command()	cgatools::command::Command	[inline, protected, virtual]