cgatools::junctions::FullGenomeJunctionComparator Member List

This is the complete list of members for cgatools::junctions::FullGenomeJunctionComparator, including all inherited members.

comatible_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
compare(const JunctionFiles &junctionFiles) (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
compareBySide(const JunctionsArray &junctions, int firstSide, JunctionRefs &oneSideCompatible, JunctionRefs &twoSidesCompatible, JunctionRefs &twoSidesIncompatible) const	cgatools::junctions::FullGenomeJunctionComparator	[protected]
distanceTolerance_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
FullGenomeJunctionComparator(uint32_t distanceTolerance, const std::vector< size_t > &scoreThresholds, const reference::CrrFile &reference, const std::string &outPrefix) (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[inline]
getCompatibility(const Junction &j0, const Junction &j1) const	cgatools::junctions::FullGenomeJunctionComparator	[protected]
getCompatible() const	cgatools::junctions::FullGenomeJunctionComparator	[inline]
getIncompatible() const	cgatools::junctions::FullGenomeJunctionComparator	[inline]
getPrefiltered() const	cgatools::junctions::FullGenomeJunctionComparator	[inline]
incompatiblePerFile_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
JunctionRefArray typedef (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
JunctionsArray typedef (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator
mergeResults(JunctionRefArray &input, JunctionRefs &output) const	cgatools::junctions::FullGenomeJunctionComparator	[protected]
outPrefix_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
prefilterByScore(JunctionsArray &junctionArray) const (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
prefilteredJunctions_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
printList(const std::string &fileName, const JunctionRefs &list, const util::DelimitedFile::Metadata &sourceMetadata, size_t multiListSize=1) const	cgatools::junctions::FullGenomeJunctionComparator
reference_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
scoreThresholds_ (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[protected]
SEPARATOR (defined in cgatools::junctions::FullGenomeJunctionComparator)	cgatools::junctions::FullGenomeJunctionComparator	[static]
splitList(const JunctionRefs &list, JunctionRefArray &result) const	cgatools::junctions::FullGenomeJunctionComparator	[protected]