cgatools::junctions::Junction Member List
This is the complete list of members for
cgatools::junctions::Junction, including all inherited members.
| annotations_ | cgatools::junctions::Junction | |
| assembledSequence_ | cgatools::junctions::Junction | |
| deletedTransposableElement_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| frequencyInBaselineGenomeSet_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| getDistance() const | cgatools::junctions::Junction | |
| getLocation(int side) const | cgatools::junctions::Junction | [inline] |
| id_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| Junction() | cgatools::junctions::Junction | |
| Junction(const std::string &junctionId, const JunctionSideSection &leftSection, const JunctionSideSection &rightSection, const std::string &transitionSequence, size_t transitionLength, bool transitionIsKnown, uint32_t score, const std::string &xRef, const std::string &deletedTransposableElement, const std::string &knownUnderrepresentedRepeat, double frequencyInBaselineGenomeSet, const std::string &assembledSequence) | cgatools::junctions::Junction | |
| knownUnderrepresentedRepeat_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| score_ | cgatools::junctions::Junction | |
| sideSections_ (defined in cgatools::junctions::Junction) | cgatools::junctions::Junction | |
| transitionIsKnown_ | cgatools::junctions::Junction | |
| transitionLength_ | cgatools::junctions::Junction | |
| transitionSequence_ | cgatools::junctions::Junction | |
| write(std::ostream &, const reference::CrrFile &, size_t expectedAnnotationCount) const | cgatools::junctions::Junction | |
| xRef_ | cgatools::junctions::Junction | |
1.6.2
