cgatools::mapping::Cigar Member List

This is the complete list of members for cgatools::mapping::Cigar, including all inherited members.

add(const CigarElement &e) (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar
add_back(const CigarElement &e)	cgatools::mapping::Cigar	[protected]
back() (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[inline]
Cigar(bool mergeNeighbours=false, bool removeZeros=false) (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[inline]
Cigar(const std::string &cigar, bool mergeNeighbours=false, bool removeZeros=false) (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[inline]
getParsedCigar() const (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[inline]
getReferenceLength() const	cgatools::mapping::Cigar
getSequenceLength() const	cgatools::mapping::Cigar
mergeNeighbours_ (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[protected]
operator<< (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[friend]
operator==(const Cigar &c) const (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[inline]
operator[](size_t i) (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[inline]
pack() const	cgatools::mapping::Cigar
parse(const std::string &cigar) (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar
ParsedCigar typedef (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar
parsedCigar_ (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[protected]
push_back(const CigarElement &e) (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[inline, protected]
removeZeros_ (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[protected]
size() const (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar	[inline]
trancatePaddings() (defined in cgatools::mapping::Cigar)	cgatools::mapping::Cigar