cgatools::mapping::GapAndConcordanceExtractor Member List

This is the complete list of members for cgatools::mapping::GapAndConcordanceExtractor, including all inherited members.
alleleAligner_ (defined in cgatools::mapping::GapAndConcordanceExtractor)cgatools::mapping::GapAndConcordanceExtractor [protected]
concordance_ (defined in cgatools::mapping::GapAndConcordanceExtractor)cgatools::mapping::GapAndConcordanceExtractor
endOffsetInAllele_ (defined in cgatools::mapping::GapAndConcordanceExtractor)cgatools::mapping::GapAndConcordanceExtractor
GapAndConcordanceExtractor(const AlleleSequenceAligner &alleleAligner) (defined in cgatools::mapping::GapAndConcordanceExtractor)cgatools::mapping::GapAndConcordanceExtractor [inline]
gaps_ (defined in cgatools::mapping::GapAndConcordanceExtractor)cgatools::mapping::GapAndConcordanceExtractor
halfDnbSize_ (defined in cgatools::mapping::GapAndConcordanceExtractor)cgatools::mapping::GapAndConcordanceExtractor [protected]
mismatches_ (defined in cgatools::mapping::GapAndConcordanceExtractor)cgatools::mapping::GapAndConcordanceExtractor
run(uint8_t side, bool strand, int32_t offsetInAllele, const std::string &alignmentCigar, const std::string &readSequence, const std::string &readScores) (defined in cgatools::mapping::GapAndConcordanceExtractor)cgatools::mapping::GapAndConcordanceExtractor
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