cgatools::mapping::GapEst::GapsEstimator Member List

This is the complete list of members for cgatools::mapping::GapEst::GapsEstimator, including all inherited members.

gapCount() const	cgatools::mapping::GapEst::GapsEstimator
GapsEstimator(const ArmData &armData, size_t side, boost::uint32_t seed) (defined in cgatools::mapping::GapEst::GapsEstimator)	cgatools::mapping::GapEst::GapsEstimator
GapTuple typedef (defined in cgatools::mapping::GapEst::GapsEstimator)	cgatools::mapping::GapEst::GapsEstimator
getGapTuples(double fraction, std::vector< GapTuple > &result) const	cgatools::mapping::GapEst::GapsEstimator
getProbability(GapTuple gaps, const SequenceRetriever &sr) const	cgatools::mapping::GapEst::GapsEstimator
getProbability(GapTuple gaps) const	cgatools::mapping::GapEst::GapsEstimator
loadGaps(const std::string &gapFile0, const std::string &gapFile1)	cgatools::mapping::GapEst::GapsEstimator
randomGaps(const SequenceRetriever &sr) const	cgatools::mapping::GapEst::GapsEstimator
Sequence typedef (defined in cgatools::mapping::GapEst::GapsEstimator)	cgatools::mapping::GapEst::GapsEstimator
~GapsEstimator() (defined in cgatools::mapping::GapEst::GapsEstimator)	cgatools::mapping::GapEst::GapsEstimator