cgatools::variants::Locus Member List

This is the complete list of members for cgatools::variants::Locus, including all inherited members.

addCall(const Call &call)	cgatools::variants::Locus
clearCalls()	cgatools::variants::Locus
extras_	cgatools::variants::Locus
getAlleles() const	cgatools::variants::Locus	[inline]
getCalls() const	cgatools::variants::Locus	[inline]
getCalls()	cgatools::variants::Locus	[inline]
getId() const	cgatools::variants::Locus
getPloidy() const	cgatools::variants::Locus
getRange() const	cgatools::variants::Locus	[inline]
getReference() const	cgatools::variants::Locus	[inline]
getType() const	cgatools::variants::Locus
getZygosity() const	cgatools::variants::Locus
hasNoCalls() const	cgatools::variants::Locus
initFromCalls(bool relaxedReferenceValidation=true)	cgatools::variants::Locus
isNoCallLocus() const	cgatools::variants::Locus
isRefCallLocus() const	cgatools::variants::Locus
isRefConsistent() const	cgatools::variants::Locus
locationCalls(const Location &loc, std::vector< std::pair< char, const Call * > > &calls) const	cgatools::variants::Locus
Locus()	cgatools::variants::Locus	[inline]
Locus(const CrrFile &crr)	cgatools::variants::Locus	[inline]
Locus(const Locus &other)	cgatools::variants::Locus
operator=(const Locus &other)	cgatools::variants::Locus
reorderAlleles()	cgatools::variants::Locus
setHapLink(size_t alleleOffset, const std::string &hapLink)	cgatools::variants::Locus
setId(boost::uint32_t locusId)	cgatools::variants::Locus
setRange(const Range &range)	cgatools::variants::Locus
writeAsOneLine(std::ostream &out, bool writeExtras=true, char sep= '\t') const	cgatools::variants::Locus
writeOneLineFileHeader(std::ostream &out, char sep= '\t') (defined in cgatools::variants::Locus)	cgatools::variants::Locus	[static]