cgatools::mapping::GapEst::NoCallSequenceRetriever Class Reference

Retrieves all no-calls. More...

#include <GapsEstimator.hpp>

Inheritance diagram for cgatools::mapping::GapEst::NoCallSequenceRetriever:

List of all members.

Public Member Functions
void	getSequence (Sequence &seq, int cloneEndOffset, int sequenceLength) const
	Store in seq the sequence starting at cloneEndOffset from the end of the clone, working towards the mate gap sequenceLength bases.

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Detailed Description

Retrieves all no-calls.

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Member Function Documentation

void cgatools::mapping::GapEst::NoCallSequenceRetriever::getSequence	(	Sequence &	seq,
		int	cloneEndOffset,
		int	sequenceLength
	)			const [virtual]

Store in seq the sequence starting at cloneEndOffset from the end of the clone, working towards the mate gap sequenceLength bases.

Implements cgatools::mapping::GapEst::SequenceRetriever.

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The documentation for this class was generated from the following file:

• GapsEstimator.hpp