cgatools::cgdata::CnvSegmentStore Class Reference

Loads CNV segment data from a file and caches it in memory. More...

#include <CnvSegmentStore.hpp>

Inheritance diagram for cgatools::cgdata::CnvSegmentStore:

List of all members.

Public Member Functions
	CnvSegmentStore (const reference::CrrFile &crr, const GenomeMetadata &exp, bool isDiploid)
	Loads all CNV segment data from a given export package.
bool	hasCalledPloidy () const
	True if the ploidy calls are present in the export package.
bool	hasCalledLevel () const
	True if the ploidy calls are present in the export package.
bool	hasLAF () const
	True if LAF information is present in the Details file.
const CnvSegmentData *	getBestOverlappingSegment (const reference::Range &r) const
	Returns the CNV segment data for the segment with the longest overlap with the given range.
void	bindColumns (util::DelimitedFile &df, reference::Range &range, CnvSegmentData &data)
	This function is not a part of the true public interface of this class.

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Detailed Description

Loads CNV segment data from a file and caches it in memory.

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Member Function Documentation

const CnvSegmentData* cgatools::cgdata::CnvSegmentStore::getBestOverlappingSegment

(

const reference::Range &

r

)

const

Returns the CNV segment data for the segment with the longest overlap with the given range.

In case of a tie, returns the data for the first segment in the reference order.

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The documentation for this class was generated from the following file:

• CnvSegmentStore.hpp