cgatools::junctions::JunctionSideSection Class Reference

Class describing the left or right side of a junction. More...

#include <Junction.hpp>

Public Member Functions
	JunctionSideSection ()
	The default constructor constructs an unknown junction side.
	JunctionSideSection (JunctionStrand, const reference::Location &position, int length, const std::string &repeatClassification, const std::string &genes)
	Constructor from strand/position/length.
void	write (std::ostream &, const reference::CrrFile &) const
	serializes the junction side into a stream
int	getDir (size_t side) const
	Returns 1 if the junction side points to increasing reference offsets and -1 otherwise.
reference::Location	getBasePos (size_t side) const
	Returns the reference position closest to the breakpoint from the given junction side.
Public Attributes
JunctionStrand	strand_
reference::Location	position_
int	length_
std::string	repeatClassification_
std::string	genes_

Detailed Description

Class describing the left or right side of a junction.

reference::Location cgatools::junctions::JunctionSideSection::getBasePos ( size_t side ) const

Returns the reference position closest to the breakpoint from the given junction side.

int cgatools::junctions::JunctionSideSection::getDir ( size_t side ) const

Returns 1 if the junction side points to increasing reference offsets and -1 otherwise.

The documentation for this class was generated from the following file: