cgatools::mapping::BaseMap2SamConverter Class Reference

Inheritance diagram for cgatools::mapping::BaseMap2SamConverter:

List of all members.

Public Member Functions
	BaseMap2SamConverter (const Map2SamConfig &config, std::ostream &outSamFile)
Protected Member Functions
virtual bool	processMappings (const mapping::ReadsRecord &readsRecord, SamRecordArray &samMappings, const mapping::MappingsRecords &baseMappingRecords) const
	a template function allowing functionality extension by a derived class, such as merge additional mappings returns true if the processing has replaced the standard processing
size_t	detectPrimaryMapping (const MappingsRecords &mappingsRecords, bool oneArmOnly, SamRecordArray &samMappings) const

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The documentation for this class was generated from the following file:

• Map2SamConverter.hpp