cgatools::mapping::SamFileRecord Member List

This is the complete list of members for cgatools::mapping::SamFileRecord, including all inherited members.

bindToParser(util::DelimitedLineParser &parser) (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
cigar_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
flag_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
getSide() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
isConsistent() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
isFirstMate() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
isLastMate() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
isMateReverseComplemented() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
isMateUnmapped() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
isReverseComplemented() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
isSecondary() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
isUnmapped() const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
mapq_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
operator<< (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[friend]
parseQName(std::string &slide, std::string &lane, size_t &batchNo, size_t &offset) const (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
pnext_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
pos_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
qname_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
qual_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
rname_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
rnext_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
SamFileRecord() (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord	[inline]
samTags_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
seq_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord
tlen_ (defined in cgatools::mapping::SamFileRecord)	cgatools::mapping::SamFileRecord