cgatools::mapping::SamFileRecord Class Reference
List of all members.
Public Member Functions |
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void | bindToParser (util::DelimitedLineParser &parser) |
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bool | isConsistent () const |
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bool | isUnmapped () const |
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bool | isMateUnmapped () const |
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bool | isReverseComplemented () const |
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bool | isMateReverseComplemented () const |
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bool | isFirstMate () const |
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bool | isLastMate () const |
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int | getSide () const |
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bool | isSecondary () const |
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void | parseQName (std::string &slide, std::string &lane, size_t &batchNo, size_t &offset) const |
Public Attributes |
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std::string | qname_ |
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uint32_t | flag_ |
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std::string | rname_ |
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uint32_t | pos_ |
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uint32_t | mapq_ |
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std::string | cigar_ |
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std::string | rnext_ |
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uint32_t | pnext_ |
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int32_t | tlen_ |
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std::string | seq_ |
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std::string | qual_ |
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SamTags< SamTag > | samTags_ |
Friends |
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std::ostream & | operator<< (std::ostream &ost, const SamFileRecord &r) |
The documentation for this class was generated from the following file:
1.6.2
