cgatools::util::DelimitedFileMetadata Class Reference

List of all members.

Public Member Functions
int	getFormatVersion () const
	Returns CGI format version for this metadata set.
std::string	getSoftwareVersionString () const
	Returns the SRC_SOFTWARE_VERSION for this file metadata.
bool	hasKey (const std::string &key) const
const std::string &	get (const std::string &key) const
template<class T >
const T	get (const std::string &key) const
void	set (const std::string &key, const std::string &value)
void	add (const std::string &key, const std::string &value)
void	removeAll (const std::string &key)
const std::vector< std::pair < std::string, std::string > > &	getMap () const
void	initDefaults (const DelimitedFileMetadata &meta=DelimitedFileMetadata())
	Fills in GENERATED_BY, GENERATED_AT, CGATOOLS_VERSION (or SOFTWARE_VERSION, if this version of cgatools is being run in the pipeline), and FORMAT_VERSION.
void	transfer (const DelimitedFileMetadata &src, const std::string &keys, const std::string &prefix="")
	Transfer specified keys from another metadata store, optionally attaching a specified prefix to each key.
void	sort ()
	Sorts the lines.
void	setFileName (const std::string &fn)
const std::string &	getFileName () const
Static Public Attributes
static const std::string	OUTPUT_FORMAT_VERSION
	Format version for the output files generated by this executable.
static std::string	PIPELINE_VERSION
	The value that goes into SOFTWARE_VERSION if this version of cgatools is being run in the pipeline.

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Member Function Documentation

int cgatools::util::DelimitedFileMetadata::getFormatVersion

(

)

const

Returns CGI format version for this metadata set.

The version is returned as MAJOR * 1000 + MINOR, that is, for format version "1.2" this returns 1002. When the version cannot be detected, throws an exception.

std::string cgatools::util::DelimitedFileMetadata::getSoftwareVersionString

(

)

const

Returns the SRC_SOFTWARE_VERSION for this file metadata.

If there is no SRC_SOFTWARE_VERSION, returns the SOFTWARE_VERSION. If neither exists, returns the value for key BUILD. If none of these exists, returns "".

void cgatools::util::DelimitedFileMetadata::initDefaults

(

const DelimitedFileMetadata &

meta = DelimitedFileMetadata()

)

Fills in GENERATED_BY, GENERATED_AT, CGATOOLS_VERSION (or SOFTWARE_VERSION, if this version of cgatools is being run in the pipeline), and FORMAT_VERSION.

Also transfers the SOFTWARE_VERSION and all the other keys not listed above from the input DelimitedFileMetadata object.

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Member Data Documentation

std::string cgatools::util::DelimitedFileMetadata::PIPELINE_VERSION [static]

The value that goes into SOFTWARE_VERSION if this version of cgatools is being run in the pipeline.

Otherwise, this string is empty.

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The documentation for this class was generated from the following file:

• DelimitedFile.hpp