cgatools::cgdata::GenomeMetadata Class Reference

List of all members.

Public Member Functions
	GenomeMetadata (const std::string &root)
std::string	getEvidenceIntervalsFileName (const std::string &chromName) const
std::string	getEvidenceDnbsFileName (const std::string &chromName) const
std::string	getReferenceSupportFileName (const std::string &chromName) const
std::string	getGeneFileName () const
std::string	getNcRNAFileName () const
std::string	getCnvSegmentsFileName () const
std::string	getGenomeReference () const
std::string	getLaneDir (const std::string &laneName) const
	the lane name is in the format "SLIDE-LANE": GS14901-FS3-L03
std::string	getLibraryName (const std::string &laneName) const
std::vector< std::string >	getLaneNames () const
std::string	getReadsFileName (const std::string &laneBatchId) const
std::string	getMappingsFileName (const std::string &laneBatchId) const
LibraryMetadata	getLibraryMetadata (const std::string &libraryName) const
std::vector< std::string >	getLibraryNames () const
int	getFormatVersion () const
const std::string &	getAsmId () const

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The documentation for this class was generated from the following file:

• GenomeMetadata.hpp