cgatools::junctions::JunctionFile Class Reference

Class describing a Junction file. More...

#include <Junction.hpp>

List of all members.

Public Member Functions
	JunctionFile (const std::string &name, const reference::CrrFile &)
	Create a populated JunctionFile object in memory by reading an existing junction file.
void	read (const std::string &name, const reference::CrrFile &reference)
	Read junctions from a file.
void	write (const std::string &name, const reference::CrrFile &)
	Write a junction file representing this JunctionFile object.
void	add (const Junction &)
	Add a new junction.
Public Attributes
Junctions	junctions_
	The junctions in this file.
util::DelimitedFile::Metadata	metadata_
	Metadata.
std::string	fileName_
	The name of the file the junctions were read from.
std::vector< std::string >	annotationHeaders_
	List of the names of the extra "annotation" columns.
Static Public Attributes
static const std::string	header_
	Header line.

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Detailed Description

Class describing a Junction file.

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Constructor & Destructor Documentation

cgatools::junctions::JunctionFile::JunctionFile	(	const std::string &	name,
		const reference::CrrFile &
	)

Create a populated JunctionFile object in memory by reading an existing junction file.

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The documentation for this class was generated from the following file:

• Junction.hpp