cgatools::mapping::DnbSequenceIterator Class Reference

An iterator through an aligned read sequence The iterator is able to return bases in reverse order or/and complimented. More...

#include <AlleleAlignment.hpp>

List of all members.

Public Member Functions
	DnbSequenceIterator (const std::string &sequence, size_t startFrom, int direction=1, bool needsComplementing=false)
DnbSequenceIterator &	operator++ ()
char	operator* () const
	return the current base
Protected Attributes
std::string	sequence_
size_t	position_
int	direction_
bool	needsComplementing_

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Detailed Description

An iterator through an aligned read sequence The iterator is able to return bases in reverse order or/and complimented.

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The documentation for this class was generated from the following file:

• AlleleAlignment.hpp